RKTrackRep.cxx

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/* Copyright 2008-2009, Technische Universitaet Muenchen,
   Authors: Christian Hoeppner & Sebastian Neubert

   This file is part of GENFIT.

   GENFIT is free software: you can redistribute it and/or modify
   it under the terms of the GNU Lesser General Public License as published
   by the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.

   GENFIT is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU Lesser General Public License for more details.

   You should have received a copy of the GNU Lesser General Public License
   along with GENFIT.  If not, see <http://www.gnu.org/licenses/>.
*/

/* The Runge Kutta implementation stems from GEANT3 originally (R. Brun et al.)
   Porting to C goes back to Igor Gavrilenko @ CERN
   The code was taken from the Phast analysis package of the COMPASS experiment
   (Sergei Gerrassimov @ CERN)
*/

#include "larreco/Genfit/RKTrackRep.h"
#include <iostream>
#include <algorithm> // std::fill
#include <type_traits> // std::extent<>
#include <math.h>
#include "TDatabasePDG.h"
#include "larreco/Genfit/GFException.h"
#include "larreco/Genfit/GFFieldManager.h"
#include "larreco/Genfit/GFMaterialEffects.h"
#include "larreco/Genfit/GFTrackCand.h"

#include "messagefacility/MessageLogger/MessageLogger.h"

#define MINSTEP 0.001   // minimum step [cm] for Runge Kutta and iteration to POCA


void genf::RKTrackRep::setData(const TMatrixT<Double_t>& st, const GFDetPlane& pl, const TMatrixT<Double_t>* cov, const TMatrixT<double>* aux){
  if(aux != NULL) {
    fCacheSpu = (*aux)(0,0);
  } else {
    if(pl!=fCachePlane){
      throw GFException("RKTrackRep::setData() called with a reference plane not the same as the one the last extrapolate(plane,state,cov) was made", __LINE__, __FILE__).setFatal();
    }
  }
  GFAbsTrackRep::setData(st,pl,cov);
  if (fCharge*fState[0][0] < 0) fCharge *= -1; // set charge accordingly! (fState[0][0] = q/p)
  fSpu=fCacheSpu;
}

const TMatrixT<double>* genf::RKTrackRep::getAuxInfo(const GFDetPlane& pl) {

  if(pl!=fCachePlane) {
      throw GFException("RKTrackRep::getAuxInfo() trying to get auxillary information with planes mismatch (Information returned does not belong to requested plane)", __LINE__, __FILE__).setFatal();
  }
  fAuxInfo.ResizeTo(1,1);
  fAuxInfo(0,0) = fCacheSpu;
  return &fAuxInfo;

}
genf::RKTrackRep::~RKTrackRep(){
  // delete fEffect;
//GFMaterialEffects is now a Singleton
}


genf::RKTrackRep::RKTrackRep() : GFAbsTrackRep(5),
                                 fCachePlane(),
                                 fCacheSpu(1),
                                 fSpu(1),
                                 fAuxInfo(1,1),
                                 fDirection(true),
                                 fPdg(0),
                                 fMass(0.),
                                 fCharge(-1)
{ }


genf::RKTrackRep::RKTrackRep(const TVector3& pos,
                       const TVector3& mom,
                       const TVector3& poserr,
                       const TVector3& momerr,
                       const int& PDGCode) :
                       GFAbsTrackRep(5),
                       fCachePlane(),
                       fCacheSpu(1),
                       fAuxInfo(1,1),
                       fDirection(true)
{
  setPDG(PDGCode); // also sets charge and mass

  //fEffect = new GFMaterialEffects();

  fRefPlane.setO(pos);
  fRefPlane.setNormal(mom);

  fState[0][0]=fCharge/mom.Mag();
  //u' and v'
  fState[1][0]=0.0;
  fState[2][0]=0.0;
  //u and v
  fState[3][0]=0.0;
  fState[4][0]=0.0;
  //spu
  fSpu=1.;

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);
  double pu=0.;
  double pv=0.;
  double pw=mom.Mag();

  fCov[3][3] = poserr.X()*poserr.X() * u.X()*u.X() +
               poserr.Y()*poserr.Y() * u.Y()*u.Y() +
               poserr.Z()*poserr.Z() * u.Z()*u.Z();
  fCov[4][4] = poserr.X()*poserr.X() * v.X()*v.X() +
               poserr.Y()*poserr.Y() * v.Y()*v.Y() +
               poserr.Z()*poserr.Z() * v.Z()*v.Z();
  fCov[0][0] = fCharge*fCharge/pow(mom.Mag(),6.) *
               (mom.X()*mom.X() * momerr.X()*momerr.X()+
                mom.Y()*mom.Y() * momerr.Y()*momerr.Y()+
                mom.Z()*mom.Z() * momerr.Z()*momerr.Z());
  fCov[1][1] = pow((u.X()/pw - w.X()*pu/(pw*pw)),2.)*momerr.X()*momerr.X() +
               pow((u.Y()/pw - w.Y()*pu/(pw*pw)),2.)*momerr.Y()*momerr.Y() +
               pow((u.Z()/pw - w.Z()*pu/(pw*pw)),2.)*momerr.Z()*momerr.Z();
  fCov[2][2] = pow((v.X()/pw - w.X()*pv/(pw*pw)),2.)*momerr.X()*momerr.X() +
               pow((v.Y()/pw - w.Y()*pv/(pw*pw)),2.)*momerr.Y()*momerr.Y() +
               pow((v.Z()/pw - w.Z()*pv/(pw*pw)),2.)*momerr.Z()*momerr.Z();

}

// Wholly new constructor from Genfit svn repos. EC< 27-Sep-2011.

genf::RKTrackRep::RKTrackRep(const GFTrackCand* aGFTrackCandPtr) :
                       GFAbsTrackRep(5),
                       fCachePlane(),
                       fCacheSpu(1),
                       fAuxInfo(1,1),
                       fDirection(true)
{
  setPDG(aGFTrackCandPtr->getPdgCode()); // also sets charge and mass

  TVector3 mom = aGFTrackCandPtr->getDirSeed();
  fRefPlane.setO(aGFTrackCandPtr->getPosSeed());
  fRefPlane.setNormal(mom);
  double pw=mom.Mag();
  fState[0][0]=fCharge/pw;
  //u' and v'
  fState[1][0]=0.0;
  fState[2][0]=0.0;
  //u and v
  fState[3][0]=0.0;
  fState[4][0]=0.0;
  //spu
  fSpu=1.;

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);
  double pu=0.;
  double pv=0.;

  TVector3 poserr = aGFTrackCandPtr->getPosError();
  TVector3 momerr = aGFTrackCandPtr->getDirError();
  fCov[3][3] = poserr.X()*poserr.X() * u.X()*u.X() +
               poserr.Y()*poserr.Y() * u.Y()*u.Y() +
               poserr.Z()*poserr.Z() * u.Z()*u.Z();
  fCov[4][4] = poserr.X()*poserr.X() * v.X()*v.X() +
               poserr.Y()*poserr.Y() * v.Y()*v.Y() +
               poserr.Z()*poserr.Z() * v.Z()*v.Z();
  fCov[0][0] = fCharge*fCharge/pow(mom.Mag(),6.) *
               (mom.X()*mom.X() * momerr.X()*momerr.X()+
                mom.Y()*mom.Y() * momerr.Y()*momerr.Y()+
                mom.Z()*mom.Z() * momerr.Z()*momerr.Z());
  fCov[1][1] = pow((u.X()/pw - w.X()*pu/(pw*pw)),2.)*momerr.X()*momerr.X() +
               pow((u.Y()/pw - w.Y()*pu/(pw*pw)),2.)*momerr.Y()*momerr.Y() +
               pow((u.Z()/pw - w.Z()*pu/(pw*pw)),2.)*momerr.Z()*momerr.Z();
  fCov[2][2] = pow((v.X()/pw - w.X()*pv/(pw*pw)),2.)*momerr.X()*momerr.X() +
               pow((v.Y()/pw - w.Y()*pv/(pw*pw)),2.)*momerr.Y()*momerr.Y() +
               pow((v.Z()/pw - w.Z()*pv/(pw*pw)),2.)*momerr.Z()*momerr.Z();

}

genf::RKTrackRep::RKTrackRep(const TVector3& pos,
                       const TVector3& mom,
                       const int& PDGCode) :
                       GFAbsTrackRep(5),
                       fCachePlane(), fCacheSpu(1), fAuxInfo(1,1),
                       fDirection(true)
{
  setPDG(PDGCode); // also sets charge and mass

  //fEffect = new GFMaterialEffects();

  fRefPlane.setO(pos);
  fRefPlane.setNormal(mom);

  fState[0][0]=fCharge/mom.Mag();
  //u' and v'
  fState[1][0]=0.0;
  fState[2][0]=0.0;
  //u and v
  fState[3][0]=0.0;
  fState[4][0]=0.0;
  //spu
  fSpu=1.;

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);
  double pu=0.;
  double pv=0.;
  double pw=mom.Mag();

  static const TVector3 stdPosErr(1.,1.,1.);
  static const TVector3 stdMomErr(1.,1.,1.);

  fCov[3][3] = stdPosErr.X()*stdPosErr.X() * u.X()*u.X() +
               stdPosErr.Y()*stdPosErr.Y() * u.Y()*u.Y() +
               stdPosErr.Z()*stdPosErr.Z() * u.Z()*u.Z();
  fCov[4][4] = stdPosErr.X()*stdPosErr.X() * v.X()*v.X() +
               stdPosErr.Y()*stdPosErr.Y() * v.Y()*v.Y() +
               stdPosErr.Z()*stdPosErr.Z() * v.Z()*v.Z();
  fCov[0][0] = fCharge*fCharge/pow(mom.Mag(),6.) *
               (mom.X()*mom.X() * stdMomErr.X()*stdMomErr.X()+
                mom.Y()*mom.Y() * stdMomErr.Y()*stdMomErr.Y()+
                mom.Z()*mom.Z() * stdMomErr.Z()*stdMomErr.Z());
  fCov[1][1] = pow((u.X()/pw - w.X()*pu/(pw*pw)),2.)*stdMomErr.X()*stdMomErr.X() +
               pow((u.Y()/pw - w.Y()*pu/(pw*pw)),2.)*stdMomErr.Y()*stdMomErr.Y() +
               pow((u.Z()/pw - w.Z()*pu/(pw*pw)),2.)*stdMomErr.Z()*stdMomErr.Z();
  fCov[2][2] = pow((v.X()/pw - w.X()*pv/(pw*pw)),2.)*stdMomErr.X()*stdMomErr.X() +
               pow((v.Y()/pw - w.Y()*pv/(pw*pw)),2.)*stdMomErr.Y()*stdMomErr.Y() +
               pow((v.Z()/pw - w.Z()*pv/(pw*pw)),2.)*stdMomErr.Z()*stdMomErr.Z();

}

genf::RKTrackRep::RKTrackRep(const GFDetPlane& pl,
                       const TVector3& mom,
                       const int& PDGCode) :
                       GFAbsTrackRep(5),
                       fCachePlane(), fCacheSpu(1), fAuxInfo(1,1),
                       fDirection(true)
{
  setPDG(PDGCode); // also sets charge and mass

  //fEffect = new GFMaterialEffects();

  fRefPlane = pl;
  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);

  double pu=mom*u;
  double pv=mom*v;
  double pw=mom*w;

  fState[0][0]=fCharge/mom.Mag();
  //u' and v'
  fState[1][0]=pu/pw;
  fState[2][0]=pv/pw;
  //u and v
  fState[3][0]=0.0;
  fState[4][0]=0.0;
  //spu
  fSpu=1.;

  static const TVector3 stdPosErr2(1.,1.,1.);
  static const TVector3 stdMomErr2(1.,1.,1.);

  fCov[3][3] = stdPosErr2.X()*stdPosErr2.X() * u.X()*u.X() +
               stdPosErr2.Y()*stdPosErr2.Y() * u.Y()*u.Y() +
               stdPosErr2.Z()*stdPosErr2.Z() * u.Z()*u.Z();
  fCov[4][4] = stdPosErr2.X()*stdPosErr2.X() * v.X()*v.X() +
               stdPosErr2.Y()*stdPosErr2.Y() * v.Y()*v.Y() +
               stdPosErr2.Z()*stdPosErr2.Z() * v.Z()*v.Z();
  fCov[0][0] = fCharge*fCharge/pow(mom.Mag(),6.) *
               (mom.X()*mom.X() * stdMomErr2.X()*stdMomErr2.X()+
                mom.Y()*mom.Y() * stdMomErr2.Y()*stdMomErr2.Y()+
                mom.Z()*mom.Z() * stdMomErr2.Z()*stdMomErr2.Z());
  fCov[1][1] = pow((u.X()/pw - w.X()*pu/(pw*pw)),2.)*stdMomErr2.X()*stdMomErr2.X() +
               pow((u.Y()/pw - w.Y()*pu/(pw*pw)),2.)*stdMomErr2.Y()*stdMomErr2.Y() +
               pow((u.Z()/pw - w.Z()*pu/(pw*pw)),2.)*stdMomErr2.Z()*stdMomErr2.Z();
  fCov[2][2] = pow((v.X()/pw - w.X()*pv/(pw*pw)),2.)*stdMomErr2.X()*stdMomErr2.X() +
               pow((v.Y()/pw - w.Y()*pv/(pw*pw)),2.)*stdMomErr2.Y()*stdMomErr2.Y() +
               pow((v.Z()/pw - w.Z()*pv/(pw*pw)),2.)*stdMomErr2.Z()*stdMomErr2.Z();

}


void genf::RKTrackRep::setPDG(int i){
  fPdg = i;
  TParticlePDG * part = TDatabasePDG::Instance()->GetParticle(fPdg);
  if(part == 0){
    std::cerr << "RKTrackRep::setPDG particle " << i
              << " not known to TDatabasePDG -> abort" << std::endl;
    exit(1);
  }
  fMass = part->Mass();
  fCharge = part->Charge()/(3.);
}

int genf::RKTrackRep::getPDG(){return fPdg;}

TVector3 genf::RKTrackRep::getPos(const GFDetPlane& pl){
  if(pl!=fRefPlane){
    TMatrixT<Double_t> s(5,1);
    extrapolate(pl,s);
    return pl.getO()+s[3][0]*pl.getU()+s[4][0]*pl.getV();
  }
  return fRefPlane.getO()+fState[3][0]*fRefPlane.getU()+fState[4][0]*fRefPlane.getV();
}


TVector3 genf::RKTrackRep::getMom(const GFDetPlane& pl){
  TMatrixT<Double_t> statePred(fState);
  TVector3 retmom;
  if(pl!=fRefPlane) {
    extrapolate(pl,statePred);
    retmom = fCacheSpu*(pl.getNormal()+statePred[1][0]*pl.getU()+statePred[2][0]*pl.getV());
  }
  else{
    retmom = fSpu*(pl.getNormal()+statePred[1][0]*pl.getU()+statePred[2][0]*pl.getV());
  }
  retmom.SetMag(1./fabs(statePred[0][0]));
  return retmom;
}

TVector3 genf::RKTrackRep::getMomLast(const GFDetPlane& pl){
  TMatrixT<Double_t> statePred(fLastState);
  TVector3 retmom;
  retmom = fSpu*(pl.getNormal()+statePred[1][0]*pl.getU()+statePred[2][0]*pl.getV());

  retmom.SetMag(1./fabs(statePred[0][0]));
  return retmom;
}


void genf::RKTrackRep::getPosMom(const GFDetPlane& pl,TVector3& pos,
                           TVector3& mom){
  TMatrixT<Double_t> statePred(fState);
  if(pl!=fRefPlane) {
    extrapolate(pl,statePred);
    mom = fCacheSpu*(pl.getNormal()+statePred[1][0]*pl.getU()+statePred[2][0]*pl.getV());
  }
  else{
    mom = fSpu*(pl.getNormal()+statePred[1][0]*pl.getU()+statePred[2][0]*pl.getV());
  }
  mom.SetMag(1./fabs(statePred[0][0]));
  pos = pl.getO()+(statePred[3][0]*pl.getU())+(statePred[4][0]*pl.getV());
}





void genf::RKTrackRep::extrapolateToPoint(const TVector3& pos,
                                   TVector3& poca,
                                   TVector3& dirInPoca){

  static const int maxIt(30);

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);

  TVector3 pTilde = fSpu* (w + fState[1][0] * u + fState[2][0] * v);
  pTilde.SetMag(1.);

  TVector3 point = o + fState[3][0]*u + fState[4][0]*v;

  TMatrixT<Double_t> state7(7,1);
  state7[0][0] = point.X();
  state7[1][0] = point.Y();
  state7[2][0] = point.Z();
  state7[3][0] = pTilde.X();
  state7[4][0] = pTilde.Y();
  state7[5][0] = pTilde.Z();
  state7[6][0] = fState[0][0];

  double coveredDistance(0.);

  GFDetPlane pl;
  int iterations(0);

  while(true){
    pl.setON(pos,TVector3(state7[3][0],state7[4][0],state7[5][0]));
    coveredDistance =  this->Extrap(pl,&state7);

    if(fabs(coveredDistance)<MINSTEP) break;
    if(++iterations == maxIt) {
      throw GFException("RKTrackRep::extrapolateToPoint==> extrapolation to point failed, maximum number of iterations reached",__LINE__,__FILE__).setFatal();
    }
  }
  poca.SetXYZ(state7[0][0],state7[1][0],state7[2][0]);
  dirInPoca.SetXYZ(state7[3][0],state7[4][0],state7[5][0]);
}




TVector3 genf::RKTrackRep::poca2Line(const TVector3& extr1,const TVector3& extr2,const TVector3& point) const {

  TVector3 theWire = extr2-extr1;
  if(theWire.Mag()<1.E-8){
    throw GFException("RKTrackRep::poca2Line(): try to find poca between line and point, but the line is really just a point",__LINE__,__FILE__).setFatal();
  }
  double t = 1./(theWire*theWire)*(point*theWire+extr1*extr1-extr1*extr2);
  return (extr1+t*theWire);
}




void genf::RKTrackRep::extrapolateToLine(const TVector3& point1,
                                   const TVector3& point2,
                                   TVector3& poca,
                                   TVector3& dirInPoca,
                                   TVector3& poca_onwire){
  static const int maxIt(30);

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);

  TVector3 pTilde = fSpu* (w + fState[1][0] * u + fState[2][0] * v);
  pTilde.SetMag(1.);

  TVector3 point = o + fState[3][0]*u + fState[4][0]*v;

  TMatrixT<Double_t> state7(7,1);
  state7[0][0] = point.X();
  state7[1][0] = point.Y();
  state7[2][0] = point.Z();
  state7[3][0] = pTilde.X();
  state7[4][0] = pTilde.Y();
  state7[5][0] = pTilde.Z();
  state7[6][0] = fState[0][0];

  double coveredDistance(0.);

  GFDetPlane pl;
  int iterations(0);

  while(true){
    pl.setO(point1);
    TVector3 currentDir(state7[3][0],state7[4][0],state7[5][0]);
    pl.setU(currentDir.Cross(point2-point1));
    pl.setV(point2-point1);
    coveredDistance = this->Extrap(pl,&state7);

    if(fabs(coveredDistance)<MINSTEP) break;
    if(++iterations == maxIt) {
      throw GFException("RKTrackRep extrapolation to point failed, maximum number of iterations reached",__LINE__,__FILE__).setFatal();
    }
  }
  poca.SetXYZ(state7[0][0],state7[1][0],state7[2][0]);
  dirInPoca.SetXYZ(state7[3][0],state7[4][0],state7[5][0]);
  poca_onwire = poca2Line(point1,point2,poca);
}




double genf::RKTrackRep::extrapolate(const GFDetPlane& pl,
                               TMatrixT<Double_t>& statePred,
                               TMatrixT<Double_t>& covPred){

  TMatrixT<Double_t> cov7x7(7,7);
  TMatrixT<Double_t> J_pM(7,5);

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);
  std::ostream* pOut = nullptr; // &std::cout if you really really want

  J_pM[0][3] = u.X();J_pM[0][4]=v.X(); // dx/du
  J_pM[1][3] = u.Y();J_pM[1][4]=v.Y();
  J_pM[2][3] = u.Z();J_pM[2][4]=v.Z();

  TVector3 pTilde = fSpu * (w + fState[1][0] * u + fState[2][0] * v);
  double pTildeMag = pTilde.Mag();

  //J_pM matrix is d(x,y,z,ax,ay,az,q/p) / d(q/p,u',v',u,v)

  // da_x/du'
  J_pM[3][1] = fSpu/pTildeMag*(u.X()-pTilde.X()/(pTildeMag*pTildeMag)*u*pTilde);
  J_pM[4][1] = fSpu/pTildeMag*(u.Y()-pTilde.Y()/(pTildeMag*pTildeMag)*u*pTilde);
  J_pM[5][1] = fSpu/pTildeMag*(u.Z()-pTilde.Z()/(pTildeMag*pTildeMag)*u*pTilde);
  // da_x/dv'
  J_pM[3][2] = fSpu/pTildeMag*(v.X()-pTilde.X()/(pTildeMag*pTildeMag)*v*pTilde);
  J_pM[4][2] = fSpu/pTildeMag*(v.Y()-pTilde.Y()/(pTildeMag*pTildeMag)*v*pTilde);
  J_pM[5][2] = fSpu/pTildeMag*(v.Z()-pTilde.Z()/(pTildeMag*pTildeMag)*v*pTilde);
  // dqOp/dqOp
  J_pM[6][0] = 1.;

  TMatrixT<Double_t> J_pM_transp(J_pM);
  J_pM_transp.T();

  cov7x7 = J_pM*(fCov*J_pM_transp);
  if (cov7x7[0][0]>=1000. || cov7x7[0][0]<1.E-50)
    {
      if (pOut) {
        (*pOut)  << "RKTrackRep::extrapolate(): cov7x7[0][0] is crazy. Rescale off-diags. Try again. fCov, cov7x7 were: " << std::endl;
        PrintROOTobject(*pOut, fCov);
        PrintROOTobject(*pOut, cov7x7);
      }
      rescaleCovOffDiags();
      cov7x7 = J_pM*(fCov*J_pM_transp);
      if (pOut) {
        (*pOut) << "New cov7x7 and fCov are ... " << std::endl;
        PrintROOTobject(*pOut, cov7x7);
        PrintROOTobject(*pOut, fCov);
      }
    }


  TVector3 pos = o + fState[3][0]*u + fState[4][0]*v;
  TMatrixT<Double_t> state7(7,1);
  state7[0][0] = pos.X();
  state7[1][0] = pos.Y();
  state7[2][0] = pos.Z();
  state7[3][0] = pTilde.X()/pTildeMag;;
  state7[4][0] = pTilde.Y()/pTildeMag;;
  state7[5][0] = pTilde.Z()/pTildeMag;;
  state7[6][0] = fState[0][0];

  double coveredDistance = this->Extrap(pl,&state7,&cov7x7);


  TVector3 O = pl.getO();
  TVector3 U = pl.getU();
  TVector3 V = pl.getV();
  TVector3 W = pl.getNormal();

  double X = state7[0][0];
  double Y = state7[1][0];
  double Z = state7[2][0];
  double AX = state7[3][0];
  double AY = state7[4][0];
  double AZ = state7[5][0];
  double QOP = state7[6][0];
  TVector3 A(AX,AY,AZ);
  TVector3 Point(X,Y,Z);
  TMatrixT<Double_t> J_Mp(5,7);

  // J_Mp matrix is d(q/p,u',v',u,v) / d(x,y,z,ax,ay,az,q/p)
  J_Mp[0][6] = 1.;
  //du'/da_x
  double AtW = A*W;
  J_Mp[1][3] = (U.X()*(AtW)-W.X()*(A*U))/(AtW*AtW);
  J_Mp[1][4] = (U.Y()*(AtW)-W.Y()*(A*U))/(AtW*AtW);
  J_Mp[1][5] = (U.Z()*(AtW)-W.Z()*(A*U))/(AtW*AtW);
  //dv'/da_x
  J_Mp[2][3] = (V.X()*(AtW)-W.X()*(A*V))/(AtW*AtW);
  J_Mp[2][4] = (V.Y()*(AtW)-W.Y()*(A*V))/(AtW*AtW);
  J_Mp[2][5] = (V.Z()*(AtW)-W.Z()*(A*V))/(AtW*AtW);
  //du/dx
  J_Mp[3][0] = U.X();
  J_Mp[3][1] = U.Y();
  J_Mp[3][2] = U.Z();
  //dv/dx
  J_Mp[4][0] = V.X();
  J_Mp[4][1] = V.Y();
  J_Mp[4][2] = V.Z();

  TMatrixT<Double_t> J_Mp_transp(J_Mp);
  J_Mp_transp.T();

  covPred.ResizeTo(5,5);
  covPred = J_Mp*(cov7x7*J_Mp_transp);


  statePred.ResizeTo(5,1);
  statePred[0][0] = QOP;
  statePred[1][0] = (A*U)/(A*W);
  statePred[2][0] = (A*V)/(A*W);
  statePred[3][0] = (Point-O)*U;
  statePred[4][0] = (Point-O)*V;

  fCachePlane = pl;
  fCacheSpu = (A*W)/fabs(A*W);

  return coveredDistance;
}




double genf::RKTrackRep::extrapolate(const GFDetPlane& pl,
                               TMatrixT<Double_t>& statePred){

  TVector3 o=fRefPlane.getO();
  TVector3 u=fRefPlane.getU();
  TVector3 v=fRefPlane.getV();
  TVector3 w=u.Cross(v);


  TVector3 pTilde = fSpu* (w + fState[1][0] * u + fState[2][0] * v);
  double pTildeMag = pTilde.Mag();

  TVector3 pos = o + fState[3][0]*u + fState[4][0]*v;

  TMatrixT<Double_t> state7(7,1);
  state7[0][0] = pos.X();
  state7[1][0] = pos.Y();
  state7[2][0] = pos.Z();
  state7[3][0] = pTilde.X()/pTildeMag;
  state7[4][0] = pTilde.Y()/pTildeMag;
  state7[5][0] = pTilde.Z()/pTildeMag;
  state7[6][0] = fState[0][0];

  TVector3 O = pl.getO();
  TVector3 U = pl.getU();
  TVector3 V = pl.getV();
  TVector3 W = pl.getNormal();

  double coveredDistance = this->Extrap(pl,&state7);

  double X = state7[0][0];
  double Y = state7[1][0];
  double Z = state7[2][0];
  double AX = state7[3][0];
  double AY = state7[4][0];
  double AZ = state7[5][0];
  double QOP = state7[6][0];
  TVector3 A(AX,AY,AZ);
  TVector3 Point(X,Y,Z);

  statePred.ResizeTo(5,1);
  statePred[0][0] = QOP;
  statePred[1][0] = (A*U)/(A*W);
  statePred[2][0] = (A*V)/(A*W);
  statePred[3][0] = (Point-O)*U;
  statePred[4][0] = (Point-O)*V;

  return coveredDistance;
}




//
// Runge-Kutta method for tracking a particles through a magnetic field.
// Uses Nystroem algorithm (See Handbook Nat. Bur. of Standards, procedure 25.5.20)
//
// Input parameters:
//    SU     - plane parameters
//    SU[0]  - direction cosines normal to surface Ex
//    SU[1]  -          -------                    Ey
//    SU[2]  -          -------                    Ez; Ex*Ex+Ey*Ey+Ez*Ez=1
//    SU[3]  - distance to surface from (0,0,0) > 0 cm
//
//    ND     - number of variables for derivatives calculation
//    P      - initial parameters (coordinates(cm), direction cosines,
//             charge/momentum (Gev-1) and derivatives this parameters  (8x7)
//
//    X         Y               Z               Ax              Ay              Az              q/P
//    P[ 0]     P[ 1]           P[ 2]           P[ 3]           P[ 4]           P[ 5]           P[ 6]
//
//    dX/dp     dY/dp           dZ/dp           dAx/dp          dAy/dp          dAz/dp          d(q/P)/dp*P[6]
//    P[ 7]     P[ 8]           P[ 9]           P[10]           P[11]           P[12]           P[13]                                 d()/dp1
//
//    P[14]     P[15]           P[16]           P[17]           P[18]           P[19]           P[20]                           d()/dp2
//    ............................................................................              d()/dpND
//
// Output parameters:
//
//    P    -  output parameters and derivatives after propagation in magnetic field
//            defined by Mfield (KGauss)
//    Where a Mfield(R,H) - is interface to magnetic field information
//    input     R[ 0],R[ 1],R[ 2] - X     , Y      and Z  of the track
//    output    H[ 0],H[ 1],H[ 2] - Hx    , Hy     and Hz of the magnetic field
//              H[ 3],H[ 4],H[ 5] - dHx/dx, dHx/dy and dHx/dz          //
//              H[ 6],H[ 7],H[ 8] - dHy/dx, dHy/dy and dHy/dz          // (not used)
//              H[ 9],H[10],H[11] - dHz/dx, dHz/dy and dHz/dz          //
//
// Authors: R.Brun, M.Hansroul, V.Perevoztchikov (Geant3)
//
bool genf::RKTrackRep::RKutta (const GFDetPlane& plane,
                         double* P,
                         double& coveredDistance,
                         std::vector<TVector3>& points,
                         std::vector<double>& pointPaths,
                         const double& /* maxLen */,  // currently not used
                         bool calcCov) const {

  static const double EC     = .000149896229;   // c/(2*10^12) resp. c/2Tera
  static const double DLT    = .0002;           // max. deviation for approximation-quality test
  static const double DLT32  = DLT/32.;         //
  static const double P3     = 1./3.;           // 1/3
  static const double Smax   = 100.0;            // max. step allowed 100->.4 EC, 6-Jan-2-11, 100->1.0
  static const double Wmax   = 3000.;           // max. way allowed.
  //static const double Pmin   = 4.E-3;           // minimum momentum for propagation [GeV]
  static const double Pmin   = 1.E-11;           // minimum momentum for propagation [GeV]

  static const int    ND     = 56;              // number of variables for derivatives calculation
  static const int    ND1    = ND-7;            // = 49
  double* R           = &P[0];                  // Start coordinates  in cm     ( x,  y,  z)
  double* A           = &P[3];                  // Start directions             (ax, ay, az);   ax^2+ay^2+az^2=1
  double  SA[3]       = {0.,0.,0.};             // Start directions derivatives
  double  Pinv        = P[6]*EC;                // P[6] is charge/momentum in e/(Gev/c)
  double  Way         = 0.;                     // Total way of the trajectory
  double  Way2        = 0.;                     // Total way of the trajectory with correct signs
  bool    error       = false;                  // Error of propogation
  bool    stopBecauseOfMaterial = false;        // does not go through main loop again when stepsize is reduced by stepper

  points.clear();
  pointPaths.clear();

  if(fabs(fCharge/P[6])<Pmin){
    std::cerr << "RKTrackRep::RKutta ==> momentum too low: " << fabs(fCharge/P[6])*1000. << " MeV" << std::endl;
    return (false);
  }

  double SU[4];
  TVector3 O = plane.getO();
  TVector3 W = plane.getNormal();
  if(W*O > 0){          // make SU vector point away from origin
    SU[0] = W.X();
    SU[1] = W.Y();
    SU[2] = W.Z();
  }
  else{
    SU[0] = -1.*W.X();
    SU[1] = -1.*W.Y();
    SU[2] = -1.*W.Z();
  }
  SU[3] = plane.distance(0.,0.,0.);

  //
  // Step estimation until surface
  //
  double Step,An,Dist,Dis,S,Sl=0;

  points.push_back(TVector3(R[0],R[1],R[2]));
  pointPaths.push_back(0.);

  An=A[0]*SU[0]+A[1]*SU[1]+A[2]*SU[2];          // An = A * N;  component of A normal to surface

    if(An == 0) {
      //      std::cerr<<"PaAlgo::RKutta ==> Component Normal to surface is 0!: "<<Step<<" cm !"<<std::endl;
      std::cerr << "RKTrackRep::RKutta ==> cannot propagate perpendicular to plane " << std::endl;
      return false; // no propagation if A perpendicular to surface}
    }
    if( plane.inActive(TVector3(R[0],R[1],R[2]),TVector3(A[0],A[1],A[2]))) {  // if direction is not pointing to active part of surface
    Dist=SU[3]-R[0]*SU[0]-R[1]*SU[1]-R[2]*SU[2];                                // Distance between start coordinates and surface
    Step=Dist/An;
  }
  else{                                                                                   // make sure to extrapolate towards surface
    if( (O.X()-R[0])*A[0] + (O.Y()-R[1])*A[1] + (O.Z()-R[2])*A[2] >0 ){         // if direction A pointing from start coordinates R towards surface
      Dist = sqrt((R[0]-O.X())*(R[0]-O.X())+                                     // |R-O|; Distance between start coordinates and origin of surface
                  (R[1]-O.Y())*(R[1]-O.Y())+
                  (R[2]-O.Z())*(R[2]-O.Z()));
    }
    else{                                                                                       // if direction pointing away from surface
      Dist = -1.*sqrt((R[0]-O.X())*(R[0]-O.X())+
                      (R[1]-O.Y())*(R[1]-O.Y())+
                      (R[2]-O.Z())*(R[2]-O.Z()));
    }
    Step=Dist;
  }

  if(fabs(Step)>Wmax) {
    //    std::cerr<<"PaAlgo::RKutta ==> Too long extrapolation requested : "<<Step<<" cm !"<<std::endl;
    std::cerr<<"RKTrackRep::RKutta ==> Too long extrapolation requested : "<<Step<<" cm !"<<std::endl;    std::cerr<<"X = "<<R[0]<<" Y = "<<R[1]<<" Z = "<<R[2]
             <<"  COSx = "<<A[0]<<"  COSy = "<<A[1]<<"  COSz = "<<A[2]<<std::endl;
    std::cout<<"Destination  X = "<<SU[0]*SU[3]<<std::endl;

      mf::LogInfo("RKTrackRep::RKutta(): ") << "Throw cet exception here, ... ";
      throw GFException("RKTrackRep::RKutta(): Runge Kutta propagation failed",__LINE__,__FILE__).setFatal();

    return(false);

    //std::cout << "RKUtta.EC: But keep plowing on, lowering Step"<< std::endl;
  }

  // reduce maximum stepsize S to Smax
  Step>Smax ? S=Smax : Step<-Smax ? S=-Smax : S=Step;

  //
  // Main cycle of Runge-Kutta method
  //

  //for saving points only when the direction didnt change
  int Ssign=1;
  if(S<0) Ssign = -1;

  while(fabs(Step)>MINSTEP && !stopBecauseOfMaterial) {

    // call stepper and reduce stepsize
    double stepperLen;
    //std::cout<< "RKTrackRep: About to enter fEffect->stepper()" << std::endl;
    /*
    stepperLen = fEffect->stepper(fabs(S),
                                  R[0],R[1],R[2],
                                  Ssign*A[0],Ssign*A[1],Ssign*A[2],
                                  fabs(fCharge/P[6]),
                                  fPdg);
    */
    // From Genfit svn, 27-Sep-2011.
    stepperLen = GFMaterialEffects::getInstance()->stepper(fabs(S),
                                  R[0],R[1],R[2],
                                  Ssign*A[0],Ssign*A[1],Ssign*A[2],
                                  fabs(fCharge/P[6]),
                                  fPdg);

    //std::cout<< "RKTrackRep: S,R[0],R[1],R[2], A[0],A[1],A[2], stepperLen is " << S <<", "<< R[0] <<", "<< R[1]<<", " << R[2] <<", "<< A[0]<<", " << A[1]<<", " << A[2]<<", " << stepperLen << std::endl;
    if (stepperLen<MINSTEP) stepperLen=MINSTEP; // prevents tiny stepsizes that can slow down the program
    if (S > stepperLen) {
      S = stepperLen;
      stopBecauseOfMaterial = true;
    }
    else if (S < -stepperLen) {
      S = -stepperLen;
      stopBecauseOfMaterial = true;
    }

    double H0[12],H1[12],H2[12],r[3];
    double S3=P3*S, S4=.25*S, PS2=Pinv*S;

    //
    // First point
    //
    r[0]=R[0]      ; r[1]=R[1]      ; r[2]=R[2]      ;
    TVector3 pos(r[0],r[1],r[2]);                                               // vector of start coordinates R0       (x, y, z)
    TVector3 H0vect = GFFieldManager::getFieldVal(pos);                         // magnetic field in 10^-4 T = kGauss
    H0[0]=PS2*H0vect.X(); H0[1]=PS2*H0vect.Y(); H0[2]=PS2*H0vect.Z();           // H0 is PS2*(Hx, Hy, Hz) @ R0
    double A0=A[1]*H0[2]-A[2]*H0[1], B0=A[2]*H0[0]-A[0]*H0[2], C0=A[0]*H0[1]-A[1]*H0[0]; // (ax, ay, az) x H0
    double A2=A[0]+A0              , B2=A[1]+B0              , C2=A[2]+C0              ; // (A0, B0, C0) + (ax, ay, az)
    double A1=A2+A[0]              , B1=B2+A[1]              , C1=C2+A[2]              ; // (A0, B0, C0) + 2*(ax, ay, az)

    //
    // Second point
    //
    r[0]+=A1*S4    ; r[1]+=B1*S4    ; r[2]+=C1*S4    ;   //setup.Field(r,H1);
    pos.SetXYZ(r[0],r[1],r[2]);
    TVector3 H1vect = GFFieldManager::getFieldVal(pos);
    H1[0]=H1vect.X()*PS2; H1[1]=H1vect.Y()*PS2;H1[2]=H1vect.Z()*PS2;    // H1 is PS2*(Hx, Hy, Hz) @ (x, y, z) + 0.25*S * [(A0, B0, C0) + 2*(ax, ay, az)]
    double A3,B3,C3,A4,B4,C4,A5,B5,C5;
    A3 = B2*H1[2]-C2*H1[1]+A[0]; B3=C2*H1[0]-A2*H1[2]+A[1]; C3=A2*H1[1]-B2*H1[0]+A[2]; // (A2, B2, C2) x H1 + (ax, ay, az)
    A4 = B3*H1[2]-C3*H1[1]+A[0]; B4=C3*H1[0]-A3*H1[2]+A[1]; C4=A3*H1[1]-B3*H1[0]+A[2]; // (A3, B3, C3) x H1 + (ax, ay, az)
    A5 = A4-A[0]+A4            ; B5=B4-A[1]+B4            ; C5=C4-A[2]+C4            ; //    2*(A4, B4, C4) - (ax, ay, az)

    //
    // Last point
    //
    r[0]=R[0]+S*A4 ; r[1]=R[1]+S*B4 ; r[2]=R[2]+S*C4 ;  //setup.Field(r,H2);
    pos.SetXYZ(r[0],r[1],r[2]);
    TVector3 H2vect = GFFieldManager::getFieldVal(pos);
    H2[0]=H2vect.X()*PS2; H2[1]=H2vect.Y()*PS2;H2[2]=H2vect.Z()*PS2;    // H2 is PS2*(Hx, Hy, Hz) @ (x, y, z) + 0.25*S * (A4, B4, C4)
    double A6=B5*H2[2]-C5*H2[1], B6=C5*H2[0]-A5*H2[2], C6=A5*H2[1]-B5*H2[0]; // (A5, B5, C5) x H2

    //
    // Test approximation quality on given step and possible step reduction
    //
    double EST = fabs((A1+A6)-(A3+A4))+fabs((B1+B6)-(B3+B4))+fabs((C1+C6)-(C3+C4));  // EST = ||(ABC1+ABC6)-(ABC3+ABC4)||_1  =  ||(axzy x H0 + ABC5 x H2) - (ABC2 x H1 + ABC3 x H1)||_1
    if(EST>DLT) {
      S*=0.5;
      stopBecauseOfMaterial = false;
      continue;
    }

    //
    // Derivatives of track parameters in last point
    //
    if(calcCov){
      for(int i=7; i!=ND; i+=7) {                               // i = 7, 14, 21, 28, 35, 42, 49;    ND = 56;   ND1 = 49; rows of Jacobian

        double* dR = &P[i];                                             // dR = (dX/dpN,  dY/dpN,  dZ/dpN)
        double* dA = &P[i+3];                                           // dA = (dAx/dpN, dAy/dpN, dAz/dpN); N = X,Y,Z,Ax,Ay,Az,q/p

        //first point
        double dA0   = H0[ 2]*dA[1]-H0[ 1]*dA[2];               // dA0/dp       }
        double dB0   = H0[ 0]*dA[2]-H0[ 2]*dA[0];               // dB0/dp        } = dA x H0
        double dC0   = H0[ 1]*dA[0]-H0[ 0]*dA[1];               // dC0/dp       }

        if(i==ND1) {dA0+=A0; dB0+=B0; dC0+=C0;}                 // if last row: (dA0, dB0, dC0) := (dA0, dB0, dC0) + (A0, B0, C0)

        double dA2   = dA0+dA[0];                               // }
        double dB2   = dB0+dA[1];                       //  } = (dA0, dB0, dC0) + dA
        double dC2   = dC0+dA[2];                               // }

        //second point
        double dA3   = dA[0]+dB2*H1[2]-dC2*H1[1];               // dA3/dp       }
        double dB3   = dA[1]+dC2*H1[0]-dA2*H1[2];               // dB3/dp        } = dA + (dA2, dB2, dC2) x H1
        double dC3   = dA[2]+dA2*H1[1]-dB2*H1[0];               // dC3/dp       }

        if(i==ND1) {dA3+=A3-A[0]; dB3+=B3-A[1]; dC3+=C3-A[2];} // if last row: (dA3, dB3, dC3) := (dA3, dB3, dC3) + (A3, B3, C3) - (ax, ay, az)

        double dA4   = dA[0]+dB3*H1[2]-dC3*H1[1];               // dA4/dp       }
        double dB4   = dA[1]+dC3*H1[0]-dA3*H1[2];               // dB4/dp        } = dA + (dA3, dB3, dC3) x H1
        double dC4   = dA[2]+dA3*H1[1]-dB3*H1[0];               // dC4/dp       }

        if(i==ND1) {dA4+=A4-A[0]; dB4+=B4-A[1]; dC4+=C4-A[2];} // if last row: (dA4, dB4, dC4) := (dA4, dB4, dC4) + (A4, B4, C4) - (ax, ay, az)

        //last point
        double dA5   = dA4+dA4-dA[0];                           // }
        double dB5   = dB4+dB4-dA[1];                           //  } =  2*(dA4, dB4, dC4) - dA
        double dC5   = dC4+dC4-dA[2];                   // }

        double dA6   = dB5*H2[2]-dC5*H2[1];                     // dA6/dp       }
        double dB6   = dC5*H2[0]-dA5*H2[2];                     // dB6/dp        } = (dA5, dB5, dC5) x H2
        double dC6   = dA5*H2[1]-dB5*H2[0];                     // dC6/dp       }

        if(i==ND1) {dA6+=A6; dB6+=B6; dC6+=C6;}                 // if last row: (dA6, dB6, dC6) := (dA6, dB6, dC6) + (A6, B6, C6)

        dR[0]+=(dA2+dA3+dA4)*S3; dA[0] = (dA0+dA3+dA3+dA5+dA6)*P3;      // dR := dR + S3*[(dA2, dB2, dC2) +   (dA3, dB3, dC3) + (dA4, dB4, dC4)]
        dR[1]+=(dB2+dB3+dB4)*S3; dA[1] = (dB0+dB3+dB3+dB5+dB6)*P3;      // dA :=     1/3*[(dA0, dB0, dC0) + 2*(dA3, dB3, dC3) + (dA5, dB5, dC5) + (dA6, dB6, dC6)]
        dR[2]+=(dC2+dC3+dC4)*S3; dA[2] = (dC0+dC3+dC3+dC5+dC6)*P3;
      }
    }

    Way2 += S;                          // add stepsize to way (signed)
    if((Way+=fabs(S))>Wmax){
      std::cerr<<"PaAlgo::RKutta ==> Trajectory is longer than length limit : "<<Way<<" cm !"
      << " p/q = "<<1./P[6]<< " GeV"<<std::endl;
      return(false);
    }

    //
    // Track parameters in last point
    //
    R[0]+=(A2+A3+A4)*S3; A[0]+=(SA[0]=(A0+A3+A3+A5+A6)*P3-A[0]);  // R  = R0 + S3*[(A2, B2, C2) +   (A3, B3, C3) + (A4, B4, C4)]
    R[1]+=(B2+B3+B4)*S3; A[1]+=(SA[1]=(B0+B3+B3+B5+B6)*P3-A[1]);  // A  =     1/3*[(A0, B0, C0) + 2*(A3, B3, C3) + (A5, B5, C5) + (A6, B6, C6)]
    R[2]+=(C2+C3+C4)*S3; A[2]+=(SA[2]=(C0+C3+C3+C5+C6)*P3-A[2]);        // SA = A_new - A_old
    Sl=S;       // last S used

    // if extrapolation has changed direction, delete the last point, because it is
    // not a consecutive point to be used for material estimations
    if(Ssign*S<0.) {
      pointPaths.at(pointPaths.size()-1)+=S;
      points.erase(points.end());
    }
    else{
      pointPaths.push_back(S);
    }

    points.push_back(TVector3(R[0],R[1],R[2]));

    double CBA = 1./sqrt(A[0]*A[0]+A[1]*A[1]+A[2]*A[2]);        // 1/|A|
    A[0]*=CBA; A[1]*=CBA; A[2]*=CBA;                            // normalize A

    // Step estimation until surface and test conditions for stop of propogation
    if(fabs(Way2)>Wmax) {
      Dis=0.;
      Dist=0.;
      S=0;
      Step=0.;
      break;
    }


    An=A[0]*SU[0]+A[1]*SU[1]+A[2]*SU[2];

    if( plane.inActive(TVector3(R[0],R[1],R[2]),TVector3(A[0],A[1],A[2]))) {
      Dis=SU[3]-R[0]*SU[0]-R[1]*SU[1]-R[2]*SU[2];
      Step=Dis/An;
    }
    else{
      if( (O.X()-R[0])*A[0] + (O.Y()-R[1])*A[1] + (O.Z()-R[2])*A[2] >0 ){
        Dis = sqrt((R[0]-O.X())*(R[0]-O.X())+
                   (R[1]-O.Y())*(R[1]-O.Y())+
                   (R[2]-O.Z())*(R[2]-O.Z()));
      }
      else{
        Dis = -1.*sqrt((R[0]-O.X())*(R[0]-O.X())+
                       (R[1]-O.Y())*(R[1]-O.Y())+
                       (R[2]-O.Z())*(R[2]-O.Z()));
      }
      Step = Dis; // signed distance to surface
    }

    //    if (An==0 || (Dis*Dist>0 && fabs(Dis)>fabs(Dist))) { // did not get closer to surface
    if (Dis*Dist>0 && fabs(Dis)>fabs(Dist)) { // did not get closer to surface
      error=true;
      Step=0;
      break;
    }
    Dist=Dis;

    //
    // reset & check step size
    //
    // reset S to Step if extrapolation too long or in wrong direction
    if (S*Step<0. || fabs(S)>fabs(Step)) S=Step;
    else if (EST<DLT32 && fabs(2.*S)<=Smax) S*=2.;

  } //end of main loop

  //
  // Output information preparation for main track parameteres
  //

  if (!stopBecauseOfMaterial) { // linear extrapolation to surface
    if(Sl!=0) Sl=1./Sl;       // Sl = inverted last Stepsize Sl
    A [0]+=(SA[0]*=Sl)*Step;    // Step  = distance to surface
    A [1]+=(SA[1]*=Sl)*Step;    // SA*Sl = delta A / delta way; local derivative of A with respect to the length of the way
    A [2]+=(SA[2]*=Sl)*Step;    // A = A + Step * SA*Sl

    P[0]      = R[0]+Step*(A[0]-.5*Step*SA[0]);    // P = R + Step*(A - 1/2*Step*SA); approximation for final point on surface
    P[1]      = R[1]+Step*(A[1]-.5*Step*SA[1]);
    P[2]      = R[2]+Step*(A[2]-.5*Step*SA[2]);

    points.push_back(TVector3(P[0],P[1],P[2]));
    pointPaths.push_back(Step);
  }

  double CBA = 1./sqrt(A[0]*A[0]+A[1]*A[1]+A[2]*A[2]);

  P[3]      = A[0]*CBA; // normalize A
  P[4]      = A[1]*CBA;
  P[5]      = A[2]*CBA;

  //
  // Output derivatives of track parameters preparation
  //
  An = A[0]*SU[0]+A[1]*SU[1]+A[2]*SU[2];
  //  An!=0 ? An=1./An : An = 0; // 1/A_normal
  fabs(An) < 1.E-6 ? An=1./An : An = 0; // 1/A_normal

  if(calcCov && !stopBecauseOfMaterial){
    for(int i=7; i!=ND; i+=7) {
      double* dR = &P[i];  double* dA = &P[i+3];
      S = (dR[0]*SU[0]+dR[1]*SU[1]+dR[2]*SU[2])*An;     // dR_normal / A_normal
      dR[0]-=S*A [0];  dR[1]-=S*A [1]; dR[2]-=S*A [2];
      dA[0]-=S*SA[0];  dA[1]-=S*SA[1]; dA[2]-=S*SA[2];
    }
  }

  if(error){
    //    std::cerr << "PaAlgo::RKutta ==> Do not get closer. Path = " << Way << " cm" << "  p/q = " << 1./P[6] << " GeV" << std::endl;
    std::cerr << "RKTrackRep::RKutta ==> Do not get closer. Path = " << Way << " cm" << "  p/q = " << 1./P[6] << " GeV" << std::endl;
    return(false);
  }

  // calculate covered distance
  if (!stopBecauseOfMaterial) coveredDistance=Way2+Step;
  else coveredDistance=Way2;

  return(true);
}




double genf::RKTrackRep::Extrap( const GFDetPlane& plane, TMatrixT<Double_t>* state, TMatrixT<Double_t>* cov) const {

  static const int maxNumIt(2000);
  int numIt(0);
  bool calcCov(true);
  if(cov==NULL) calcCov=false;

  double P[56]; // only 7 used if no covariance matrix
  if(calcCov) std::fill(P, P + std::extent<decltype(P)>::value, 0);
//  else {} // not needed std::fill(P, P + 7, 0);

  for(int i=0;i<7;++i){
    P[i] = (*state)[i][0];
  }

  TMatrixT<Double_t> jac(7,7);
  TMatrixT<Double_t> jacT(7,7);
  TMatrixT<Double_t> oldCov(7,7);
  if(calcCov) oldCov=(*cov);
  double coveredDistance(0.);
  double sumDistance(0.);

  while(true){
    if(numIt++ > maxNumIt){
      throw GFException("RKTrackRep::Extrap ==> maximum number of iterations exceeded",
        __LINE__,__FILE__).setFatal();
    }

    if(calcCov){
      memset(&P[7],0x00,49*sizeof(double));
      for(int i=0; i<6; ++i){
        P[(i+1)*7+i] = 1.;
      }
      P[55] =  (*state)[6][0];
    }

//    double dir(1.);
    {
      TVector3 Pvect(P[0],P[1],P[2]); //position
      TVector3 Avect(P[3],P[4],P[5]); //direction
      TVector3 dist = plane.dist(Pvect); //from point to plane
      //      std::cout << "RKTrackRep::Extrap(): Position, Direction, Plane, dist " << std::endl;
      //Pvect.Print();
      //Avect.Print();
      //plane.Print();
      //dist.Print();
 //     if(dist*Avect<0.) dir=-1.;
    }

    TVector3 directionBefore(P[3],P[4],P[5]); // direction before propagation
    directionBefore.SetMag(1.);

    // propagation
    std::vector<TVector3> points;
    std::vector<double> pointPaths;
    if( ! this->RKutta(plane,P,coveredDistance,points,pointPaths,-1.,calcCov) ) { // maxLen currently not used
      //GFException exc("RKTrackRep::Extrap ==>  Runge Kutta propagation failed",__LINE__,__FILE__);


      //exc.setFatal(); // stops propagation; faster, but some hits will be lost
      mf::LogInfo("RKTrackRep::RKutta(): ") << "Throw cet exception here, ... ";
      throw GFException("RKTrackRep::RKutta(): Runge Kutta propagation failed",
        __LINE__,__FILE__).setFatal();
    }

    TVector3 directionAfter(P[3],P[4],P[5]); // direction after propagation
    directionAfter.SetMag(1.);

    sumDistance+=coveredDistance;

    // filter Points
    std::vector<TVector3> pointsFilt(1, points.at(0));
    std::vector<double> pointPathsFilt(1, 0.);
    // only if in right direction
    for(unsigned int i=1;i<points.size();++i){
      if (pointPaths.at(i) * coveredDistance > 0.) {
        pointsFilt.push_back(points.at(i));
        pointPathsFilt.push_back(pointPaths.at(i));
      }
      else {
        pointsFilt.back() = points.at(i);
        pointPathsFilt.back() += pointPaths.at(i);
      }
      // clean up tiny steps
      int position = pointsFilt.size()-1;  // position starts with 0
      if (fabs(pointPathsFilt.back()) < MINSTEP && position > 1) {
        pointsFilt.at(position-1) = pointsFilt.at(position);
        pointsFilt.pop_back();
        pointPathsFilt.at(position-1) += pointPathsFilt.at(position);
        pointPathsFilt.pop_back();
      }
    }

    //consistency check
    double checkSum(0.);
    for(unsigned int i=0;i<pointPathsFilt.size();++i){
      checkSum+=pointPathsFilt.at(i);
    }
    //assert(fabs(checkSum-coveredDistance)<1.E-7);
    if(fabs(checkSum-coveredDistance)>1.E-7){
      throw GFException("RKTrackRep::Extrap ==> fabs(checkSum-coveredDistance)>1.E-7",__LINE__,__FILE__).setFatal();
    }

    if(calcCov){ //calculate Jacobian jac
      for(int i=0;i<7;++i){
              for(int j=0;j<7;++j){
                if(i<6) jac[i][j] = P[ (i+1)*7+j ];
                else jac[i][j] = P[ (i+1)*7+j ]/P[6];
              }
      }
      jacT = jac;
      jacT.T();
    }

    TMatrixT<Double_t> noise(7,7); // zero everywhere by default

    // call MatEffects
    double momLoss; // momLoss has a sign - negative loss means momentum gain

    /*
    momLoss = fEffect->effects(pointsFilt,
                               pointPathsFilt,
                               fabs(fCharge/P[6]), // momentum
                               fPdg,
                               calcCov,
                               &noise,
                               &jac,
                               &directionBefore,
                               &directionAfter);
    */
    momLoss = GFMaterialEffects::getInstance()->effects(pointsFilt,
                               pointPathsFilt,
                               fabs(fCharge/P[6]), // momentum
                               fPdg,
                               calcCov,
                               &noise,
                               &jac,
                               &directionBefore,
                               &directionAfter);

    if(fabs(P[6])>1.E-10){ // do momLoss only for defined 1/momentum .ne.0
            P[6] = fCharge/(fabs(fCharge/P[6])-momLoss);
    }

    if(calcCov){ //propagate cov and add noise
      oldCov = *cov;
      *cov = jacT*((oldCov)*jac)+noise;
    }


    //we arrived at the destination plane, if we point to the active area
    //of the plane (if it is finite), and the distance is below threshold
    if( plane.inActive(TVector3(P[0],P[1],P[2]),TVector3(P[3],P[4],P[5]))) {
      if(plane.distance(P[0],P[1],P[2])<MINSTEP) break;
    }
  }
  (*state)[0][0] = P[0];  (*state)[1][0] = P[1];
  (*state)[2][0] = P[2];  (*state)[3][0] = P[3];
  (*state)[4][0] = P[4];  (*state)[5][0] = P[5];
  (*state)[6][0] = P[6];

  return sumDistance;
}

void genf::RKTrackRep::rescaleCovOffDiags()
{

  for(int i=0;i<fCov.GetNrows();++i){
    for(int j=0;j<fCov.GetNcols();++j){
      if(i!=j){//off diagonal
        fCov[i][j]=0.5*fCov[i][j];
      }
      else{//diagonal. Do not let diag cov element be <=0.
        if (fCov[i][j]<=0.0) fCov[i][j] = 0.01;
      }
    }
  }
}

///ClassImp(RKTrackRep)